PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC38_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 27901.4 Da PI: 8.6671 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.8e-18 | 34 | 82 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g RrC38_p4 34 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 82 56******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.0E-33 | 33 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.20E-29 | 33 | 89 | No hit | No description |
PROSITE profile | PS51032 | 20.534 | 33 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-20 | 34 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-27 | 34 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 34 | 45 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 36 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGFAIAHQNT TNTATTTTGE RRGRRSKQAE PGRFLGVRRR PWGRYAAEIR DPTTKERHWL 60 GTFDTAHEAA LAYDRAALSM RGTQGRTNFV YTPTDVHTIL TNPNLHSLIV SPYNNNQSLL 120 PNSSPQFVID HHPHYQNYHH HQQPKHIPVA SFKTPVRHQN SVFSTSPQNS SSNGSLSSSL 180 DEENNFFSFD GSNSSNNSGY LDCIVPNHCL KPPPETTTTQ SQIGAGFTTP SSKASDSYGW 240 FNNSYFEDGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-20 | 23 | 89 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069328 | 1e-165 | AC069328.1 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence. | |||
GenBank | AY560873 | 1e-165 | AY560873.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18560) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-165 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458523.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF086-like | ||||
Swissprot | Q6J9Q2 | 1e-140 | ERF86_ARATH; Ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A397ZSW3 | 1e-155 | A0A397ZSW3_BRACM; Uncharacterized protein | ||||
STRING | Bo3g013220.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5487 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 2e-96 | ERF family protein |
Publications ? help Back to Top | |||
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