PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC389_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 309aa    MW: 35624.1 Da    PI: 7.2023
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC389_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.2e-131462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ +++++G+g +W   ++++g +R++k+c++rw++yl
        RrC389_p1 14 KGPWSPEEDAMLKFYIEKHGTGnNWIQLPHKIGIKRCGKSCRLRWLNYL 62
                     79*******************************55************97 PP
2Myb_DNA-binding37.65.1e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        RrC389_p1  69 GAFTNEEDYIICSLYITIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.396962IPR017930Myb domain
SuperFamilySSF466897.1E-2713109IPR009057Homeodomain-like
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002499.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231569IPR009057Homeodomain-like
CDDcd001674.26E-81662No hitNo description
PROSITE profilePS5129420.77663117IPR017930Myb domain
SMARTSM007174.7E-1167115IPR001005SANT/Myb domain
PfamPF002491.3E-1069111IPR001005SANT/Myb domain
CDDcd001671.10E-670113No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2370118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRAPCCDKT VVKKGPWSPE EDAMLKFYIE KHGTGNNWIQ LPHKIGIKRC GKSCRLRWLN  60
YLRPNLKHGA FTNEEDYIIC SLYITIGSRW SIIASQLPGR TDNDIKNYWN TRLKKKLISK  120
QGKAIHQQLS LRLEPETIWK RSSFGQNQIL MIHDENSKPP LNQTLHNQMA DPSITSFAME  180
EKRMVKDPVL GLFSWEQNRV WFDIDHNAAS SSYHHHASPH LNSMTTTSSS SIGTNSSLQM  240
SHYTINNNDH GDQEMFFMAG FDNLQNELFD EIINNNTAEF EFRGTETLNN NCLGHEINSF  300
TDYPLKDNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891830.0AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468738.10.0PREDICTED: transcription factor RAX3
RefseqXP_018468751.10.0PREDICTED: transcription factor RAX3-like
SwissprotF4JSU01e-157MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A0D3A1650.0A0A0D3A165_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FL800.0A0A3P6FL80_BRAOL; Uncharacterized protein
STRINGBo1g003420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-144myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]