PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC387_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 148aa    MW: 16914.7 Da    PI: 10.5883
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC387_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.41.1e-33965158
  CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
               +ep+YVNaKQyq+Il+RRq+Rak+e e kl +ksrkpylheSRh+hA+rRpRg+gGrF
  RrC387_p6  9 QEPVYVNAKQYQAILRRRQARAKAELEMKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 65
               69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-36768IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.414868IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-291065IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-241133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601333IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-244265IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPLPPEVAQE PVYVNAKQYQ AILRRRQARA KAELEMKLIK SRKPYLHESR HQHAMRRPRG  60
TGGRFAKKTN TEASQPKARE KSNGSRTQSP TSSHSDQPEA WNDEYRTQSE EMQSSASNRR  120
EEAEDCSGQQ WNSISSSNHP SQARLAIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20965258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4120561e-113AF412056.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds.
GenBankAY0876961e-113AY087696.1 Arabidopsis thaliana clone 37744 mRNA, complete sequence.
GenBankAY0939711e-113AY093971.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491805.11e-100PREDICTED: nuclear transcription factor Y subunit A-9 isoform X1
RefseqXP_018491806.11e-100PREDICTED: nuclear transcription factor Y subunit A-9 isoform X2
RefseqXP_018491807.11e-100PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
SwissprotQ945M99e-82NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A397ZC385e-88A0A397ZC38_BRACM; Uncharacterized protein
STRINGBra031242.1-P5e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-84nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]