PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC3865_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 164aa MW: 18698.6 Da PI: 10.3882 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.3 | 3.5e-10 | 109 | 141 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 n+yps +++ LA+++gL+ +qV++WF N R + RrC3865_p1 109 NPYPSDADKHLLARQTGLSRNQVSNWFINARVR 141 9******************************98 PP | |||||||
2 | BELL | 70.1 | 3.9e-23 | 1 | 43 | 30 | 72 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkdaia q+ RrC3865_p1 1 MQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAIAVQL 43 9***************************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 6.5E-18 | 1 | 40 | IPR006563 | POX domain |
SMART | SM00389 | 3.7E-6 | 96 | 149 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 9.4E-17 | 105 | 141 | IPR008422 | Homeobox KN domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 105 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-15 | 105 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.531 | 109 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.73E-11 | 109 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MQMVVNSFDQ VMGYGAAVPY TTLAQKAMSR HFRCLKDAIA VQLKHSCELL GDKESAGGAS 60 SGLTKGETPR LRLLEQSLRQ QRAFHHMGMM EQEAWRPQRG LPERSHFLNP YPSDADKHLL 120 ARQTGLSRNQ VSNWFINARV RLWKPMVEEI LPSSFLHLSI NLLR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC004482 | 1e-104 | AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence. | |||
GenBank | AF353092 | 1e-104 | AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds. | |||
GenBank | AY058179 | 1e-104 | AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. | |||
GenBank | AY142019 | 1e-104 | AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-104 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459020.1 | 1e-101 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 1e-100 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A078JCR1 | 1e-97 | A0A078JCR1_BRANA; BnaC04g56300D protein | ||||
TrEMBL | A0A0D3C1J6 | 1e-97 | A0A0D3C1J6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CR34 | 1e-97 | A0A3P6CR34_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4ETL5 | 1e-101 | M4ETL5_BRARP; Uncharacterized protein | ||||
STRING | AT2G23760.2 | 2e-98 | (Arabidopsis thaliana) | ||||
STRING | Bra032147.1-P | 1e-102 | (Brassica rapa) | ||||
STRING | Bo4g151860.1 | 2e-98 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23760.3 | 4e-91 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|