PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3851_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 65aa MW: 7278.49 Da PI: 11.3844 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++nrqvtfskRrng++KKA+EL +LCdaev +iifsstg+lye+ss RrC3851_p1 9 KRIDNSTNRQVTFSKRRNGLMKKAKELAILCDAEVGLIIFSSTGRLYEFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.632 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.28E-37 | 2 | 62 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-30 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MGRGKIAIKR IDNSTNRQVT FSKRRNGLMK KAKELAILCD AEVGLIIFSS TGRLYEFSSS 60 RTGQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-21 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 5e-21 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 5e-21 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 5e-21 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468382.1 | 4e-36 | PREDICTED: agamous-like MADS-box protein AGL16 isoform X1 | ||||
Refseq | XP_018468383.1 | 3e-36 | PREDICTED: agamous-like MADS-box protein AGL16 isoform X2 | ||||
Swissprot | A2RVQ5 | 2e-33 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A068F605 | 2e-32 | A0A068F605_BRANA; Agamous-like protein 16 | ||||
TrEMBL | A0A398APE6 | 2e-32 | A0A398APE6_BRACM; Uncharacterized protein | ||||
STRING | Bra011509.1-P | 1e-32 | (Brassica rapa) | ||||
STRING | Bo1g007520.1 | 1e-32 | (Brassica oleracea) | ||||
STRING | Lus10028214 | 9e-33 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 6e-36 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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