PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3821_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 590aa    MW: 64107.1 Da    PI: 7.8518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3821_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17121171255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp + g  +r++lg+f  +e+Aa a+++a+ +++g
  RrC3821_p2 121 HYRGVRQRP-WGKFAAEIRDPAKFG--ARVWLGTFEKEEDAALAYDRAAFRMRG 171
                 8********.**********97654..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-30120180No hitNo description
Gene3DG3DSA:3.30.730.101.7E-29120179IPR001471AP2/ERF domain
SMARTSM003809.6E-37121185IPR001471AP2/ERF domain
PfamPF008471.3E-11121171IPR001471AP2/ERF domain
PROSITE profilePS5103223.38121179IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-21121181IPR016177DNA-binding domain
PRINTSPR003673.4E-12122133IPR001471AP2/ERF domain
PRINTSPR003673.4E-12161181IPR001471AP2/ERF domain
PfamPF095984.6E-20246312IPR019084Stm1, N-terminal
PfamPF047743.9E-26374478IPR006861Hyaluronan/mRNA-binding protein
SMARTSM012333.8E-36374479IPR006861Hyaluronan/mRNA-binding protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MMAATETEYA LLESIRRHLL GGETELQYSE STPSSCLTES TWGDLPLKEN DSEDMLVYGV  60
LNGAACDTSS PSSDLSCLSD FLDLEPSSKP SAVKTEPSEN LAAVAEKPKE AVATPAKEKK  120
HYRGVRQRPW GKFAAEIRDP AKFGARVWLG TFEKEEDAAL AYDRAAFRMR GSRALLNFPW  180
RVNSGEPDPV RIPSKKSYTS SSSENGTPKR RRNGEDVASS ELRVKCEIPS CSQKKLFRFD  240
FTRQEMTTLN PFDLLGDDAE DPSQIVLSLP KKIEKPAPVQ PAKAAKLPTK PLPPSQAVRE  300
SRNGPSGGRV GGAAGRDGPP RGSFNPGGNR PHDPKDGPKD GERNGGFRGY RESGGRGGHI  360
GGFANGKTGD VERPKRVFDR RSATGRSNDL KREGGGRGNW GTPEDDIQPA TDGPTTEVEK  420
SPVADKEGGE DATTDSKKEV PEVEQEPEDK EMTLEEYEKI LEEKKKALQA TKVEERKVDT  480
KVFESMQQLS NKKTNDEEIF IKLGSDKDKR KDAAAEKEEK AKKSLSINEF LNPANGENYN  540
PRGGYRGRGG RGGGRGQRDA KANGGGNQRN VGGAPAPAIG DSAQFPSLGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-36120186470ATERF1
3gcc_A7e-36120186470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1547555RGGRGGGRG
Functional Description ? help Back to Top
Source Description
UniProtBinds RNA. {ECO:0000250|UniProtKB:Q9SQ56}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834931e-127AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452336.11e-169PREDICTED: uncharacterized protein LOC108823595
SwissprotO235931e-106RGGB_ARATH; RGG repeats nuclear RNA binding protein B
TrEMBLA0A0D3E7701e-162A0A0D3E770_BRAOL; Uncharacterized protein
TrEMBLM4DLW51e-162M4DLW5_BRARP; Uncharacterized protein
STRINGBra017496.1-P1e-163(Brassica rapa)
STRINGBo9g069370.11e-163(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-75ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Landsberger M,Lorković ZJ,Oelmüller R
    Molecular characterization of nucleus-localized RNA-binding proteins from higher plants.
    Plant Mol. Biol., 2002. 48(4): p. 413-21
    [PMID:11905967]
  2. Reumann S, et al.
    Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.
    Plant Cell, 2007. 19(10): p. 3170-93
    [PMID:17951448]
  3. Hajduch M, et al.
    Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
    Plant Physiol., 2010. 152(4): p. 2078-87
    [PMID:20118269]
  4. Černý M, et al.
    Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation.
    J. Exp. Bot., 2013. 64(14): p. 4193-206
    [PMID:24064926]