PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3812_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | AP2 | ||||||||
Protein Properties | Length: 531aa MW: 58194 Da PI: 6.326 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.6 | 4.6e-11 | 253 | 307 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpse....ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I ++ + +++++l gt+eeAa+a++ a+ k++g RrC3812_p1 253 YRGVTRHHQHGRWQARIGR-KImriqD-GHAYINLFCSGTEEEAAEAYDIAAIKFRG 307 9***************999.3332333.36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.011 | 176 | 222 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-5 | 194 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-10 | 251 | 316 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.53E-18 | 251 | 317 | No hit | No description |
SMART | SM00380 | 4.6E-19 | 252 | 321 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-10 | 252 | 315 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.87 | 252 | 315 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-7 | 253 | 307 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MNSNNWLAFP LSPTHSPLPP HIHSSQTSHF NLGLVNDNMD NPFQNQEWNM INPHDGGGEG 60 GGVPKVADFL GVGKSENHQA DHNLVPFNDI HQTNDSDYYF QTNSLLPTVV TCASNTPNNY 120 ELQESAHNLQ SLTLSMGSTG ATAAAAATVK ASPDEISADI SSSTTNASGG AIVEATPRRT 180 LETFGQRTSI YRGKAARAYD LAALKYWGPS TTTNFPVTNY EKEVEEMKHM TRQEFVAAIR 240 RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RKIMRIQDGH AYINLFCSGT EEEAAEAYDI 300 AAIKFRGLNA VTNFEINRYD VKAILESNTL PIGGGAAKRL KEAQALESSR KREEMIALSS 360 NLHQYSAASS SRLQLQPYPL SIQQPFEHLH HQPLLTLQND NDISQYHTNA HDSYSYIQTQ 420 LHLHQQQTND YLQSSSHSSQ LYNAYLQSNP GLLEGFVSDD NNNNTSVLGN NIGIGIGSTS 480 TVGSSAEYEF PTVKVDYDMP PSSGATGYGG WITGVSGQGS NPGGVFTMWN E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY506550 | 1e-168 | AY506550.1 Arabidopsis thaliana PLETHORA2 (PLT2) mRNA, complete cds. | |||
GenBank | BT020277 | 1e-168 | BT020277.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. | |||
GenBank | BT020460 | 1e-168 | BT020460.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018487054.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | V4KGN8 | 0.0 | V4KGN8_EUTSA; Uncharacterized protein | ||||
STRING | XP_010461951.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3015 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |