PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC380_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 267aa MW: 28506.5 Da PI: 8.2206

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC380_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95	8.5e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+++e++ RrC380_p1 4 SCNGCRVLRKGCSEDCSIRPCLgwiksPEAQANATVFLAKFYGRAGLMNLINAGPEHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQSAVEAV 103 6************************************************************************************************999 PP DUF260 96 llke 99 +++e RrC380_p1 104 MRGE 107 8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.6E-95	1	267	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.313	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.3E-24	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQSAV EAVMRGEPIT EMATDAATSG 120 QGPPLKMYDI RHISKDENSP AAAAAGSTDP KRGKKARRAK RVASAAAVAK PAESEGKSAG 180 GEGEASHDSS LSHQSEVVAP HEEESNISEV MTFSPTTAAA SGEIKLDLTL GLEPASRVDH 240 VVPVKKRKMG VFSTWQQESS CKTDLML

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY208877	0.0	AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433202.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-152	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	D7KZI6	1e-153	D7KZI6_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__191__AT3G02550.1	1e-154	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-141	LOB domain-containing protein 41