PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC38046_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 128aa MW: 14151.1 Da PI: 11.0715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.6 | 3e-08 | 106 | 125 | 2 | 22 |
AP2 2 gykGVrwdkkrgrWvAeIrdp 22 y+GVr+++ +g+WvAeIr p RrC38046_p1 106 LYRGVRQRH-WGKWVAEIRLP 125 59******9.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.507 | 106 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-5 | 106 | 126 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-9 | 106 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
TNLSPKVSEI RASLAGGPNT LDSVFSFLAT SSVTTSLDTL NPPPLQLGSS VYLHQRDLIE 60 SFHLQNRAIS TPPPPLFSSS FDHQSSPAAA FAAALAAWWT LKKKKLYRGV RQRHWGKWVA 120 EIRLPQNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013661527.1 | 6e-67 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 1e-51 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A078IAD3 | 1e-65 | A0A078IAD3_BRANA; BnaA09g12290D protein | ||||
TrEMBL | A0A3P5XXM8 | 1e-65 | A0A3P5XXM8_BRACM; Uncharacterized protein | ||||
STRING | Bra027736.1-P | 7e-66 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4174 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 9e-40 | ERF family protein |
Publications ? help Back to Top | |||
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