PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC378_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 428aa    MW: 47851.7 Da    PI: 5.7167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC378_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.5e-10221262854
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 Er RR + +++f  L+ l+P++     +K++ a+i+ +A+++Ik+L
  RrC378_p8 221 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIDHIKEL 262
                6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-9211267No hitNo description
Gene3DG3DSA:4.10.280.102.0E-9212273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.42E-12212279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.624213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-6219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7221262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MESGNMFEEI GCFDPNAPAD MTVESNFSPA EPPPPVLVAG STSNSNCSLE DLSEFHLSPQ  60
DCSLAAAAAA SVHQLHINAT PPSCDHQLQS LIHQNFQDPS YAPQSNNWDN GYQDFVTLGP  120
NHTTPDLLSL LQLPRSSLPP FATPSLHDMI MTSSSAASAA FDPLYHLNFP LQPPSGTLLG  180
VEDQTEFNGV NGLIYSEENN NTENGLNRKG RGSRKRKVFP TERERRVHFK DRFGDLKNLI  240
PNPTKNDRAS IVGEAIDHIK ELLRTIEEFK MLLEKKRITR QRNKRGRIEV GEEDVGDENY  300
NAQSEVVEQC LVNKKNNALR CSWLKRKSKF TEVDVRIIDD EVTIKIVQKK KINCLVFVSK  360
VIDQLQLDLH HVAGAQIGEH HSFLFNTKIC EGSSVYASAI ADRVMEVLEK QYMEALSSNN  420
GYHCYTSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284RQRNKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483070.10.0PREDICTED: transcription factor bHLH89
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLA0A078F9Z00.0A0A078F9Z0_BRANA; BnaC05g04240D protein
TrEMBLA0A0D3C8130.0A0A0D3C813_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EBF70.0A0A3P6EBF7_BRAOL; Uncharacterized protein
STRINGBo5g007310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]