PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3785_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 162aa    MW: 17923.4 Da    PI: 10.3718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3785_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-182876355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +kG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  RrC3785_p2 28 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 76
                8*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.4842784IPR001471AP2/ERF domain
SMARTSM003801.2E-362790IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-212885IPR016177DNA-binding domain
CDDcd000189.49E-262886No hitNo description
Gene3DG3DSA:3.30.730.101.4E-292885IPR001471AP2/ERF domain
PfamPF008471.2E-112876IPR001471AP2/ERF domain
PRINTSPR003672.3E-82839IPR001471AP2/ERF domain
PRINTSPR003672.3E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042742Biological Processdefense response to bacterium
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MLQHGAAAME AGVVAADVAG GRKRDRPFKG IRMRKWGKWV AEIREPNKRS RLWLGSYSTP  60
EAAARAYDTA VFYLRGPTAT LNFPELMQST ERSSVQDMSA AAIRKKATEV GAEVDAYGMA  120
VMNSKRRRVF GQKGDYAGGL LERVDLNKLP YPENQDNDVV GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152891670ATERF1
3gcc_A2e-152891670ATERF1
5wx9_A8e-1528851573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434782.11e-116PREDICTED: ethylene-responsive transcription factor ERF011
SwissprotQ9SNE12e-81ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A078FXJ41e-97A0A078FXJ4_BRANA; BnaC08g21640D protein
TrEMBLA0A0D3DRV81e-97A0A0D3DRV8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FG541e-97A0A3P6FG54_BRAOL; Uncharacterized protein
STRINGBo8g079660.12e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.17e-80cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]