PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3662_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 227aa MW: 24739.3 Da PI: 4.0467 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40.5 | 6.4e-13 | 10 | 102 | 7 | 94 |
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP+a v r++k+ l + + i k+a e + fi ++++ a+d c+ +r+t++++d++ al ++ f +++ plk+ l+ +++ + RrC3662_p1 10 ELPLAIVRRVVKEKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDVCKDSRRQTMKAEDVFKALEDMEFSEFLGPLKASLEDFKKKN 102 79**********999752222356899***********************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-25 | 10 | 109 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-8 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.1E-20 | 11 | 109 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-25 | 160 | 189 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDSEKSVVDE LPLAIVRRVV KEKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND 60 VCKDSRRQTM KAEDVFKALE DMEFSEFLGP LKASLEDFKK KNAGKKAAAA GGGGGSGAAA 120 ASKPKETKKR KHEEEASTQK GVTKSKRDEG DLEKNVEDDN TKENEDDNTE ENGNDDEEEE 180 EEDAADGNEE NSMEENGNED NSMEEAGSGS GSGEDDENEG IGEEDDE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT004083 | 1e-103 | BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018440863.1 | 1e-110 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A397YKX3 | 1e-91 | A0A397YKX3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D6A7 | 1e-91 | M4D6A7_BRARP; Uncharacterized protein | ||||
STRING | Bra012016.1-P | 2e-92 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-62 | nuclear factor Y, subunit B11 |