PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC365_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22564.2 Da PI: 7.4542 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.8e-21 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + + r++lg+f++aeeAa+a++aa+++l+g RrC365_p1 21 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 71 68********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-14 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-17 | 21 | 78 | No hit | No description |
SMART | SM00380 | 1.9E-37 | 22 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-32 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.446 | 22 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MRKGRGSSVV PPALLGSVKE PRYRGVRKRP WGRFAAEIRD PLKKSRVWLG TFDSAEEAAR 60 AYDAAARNLR GPKAKTNFHF DSSPLHQNQI DPFMDHRLYG VEEEEQEEVI ISRPASSTMS 120 STVKSCGGPR PAAKRYQRTP PVAPEDCRSG CDSSSSVVDD DGDDIASSSS RRKPPFEFDL 180 NFPPLDGVDL FAGADDLHCT DLRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-20 | 22 | 78 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486954.1 | 3e-98 | PREDICTED: ethylene-responsive transcription factor 7-like | ||||
Swissprot | Q9LDE4 | 2e-87 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A078HCE7 | 9e-92 | A0A078HCE7_BRANA; BnaC03g41530D protein | ||||
TrEMBL | A0A3P6AYW7 | 9e-92 | A0A3P6AYW7_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo3g074840.1 | 3e-89 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 9e-74 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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