PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3638_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARF | ||||||||
Protein Properties | Length: 603aa MW: 68705 Da PI: 6.2178 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.5 | 7e-25 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF + +++el RrC3638_p2 112 FTKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYKWKFKHIFRGQPRRHLLTTGWSNFVTSKKLVAGDTFVFL--RGENGEL 206 89****************************9643..445569************************************************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ RrC3638_p2 207 RVGVRRA 213 *****97 PP | |||||||
2 | Auxin_resp | 113.2 | 2.5e-37 | 238 | 317 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++t+s+F+v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe++ds+e+r+sGtvvgv+d++p +W++SkWrsL+ RrC3638_p2 238 ACHATQTRSMFTVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGDDSPEKRFSGTVVGVQDCSP-HWKDSKWRSLQ 317 6899**************6..9*************************************************.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-39 | 102 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-43 | 103 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-21 | 110 | 212 | No hit | No description |
SMART | SM01019 | 2.5E-25 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-23 | 112 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 238 | 317 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.8E-7 | 470 | 527 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.85E-12 | 486 | 567 | No hit | No description |
PROSITE profile | PS51745 | 24.555 | 491 | 591 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.4E-5 | 534 | 579 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MTIGDDMYEE LWKLSAGPLV DVPQAEERVY YFPQGHMEQL EASTQQDLNT MKPLFDLPPK 60 ILCRVMNVRL QAEKDRDEVY AQIMLMPEET VDEPMSPDPS LPESQRPKFH SFTKVLTASD 120 TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAEDVHGY KWKFKHIFRG QPRRHLLTTG 180 WSNFVTSKKL VAGDTFVFLR GENGELRVGV RRANRQQSSM PSSVISSHSM HLGVLATACH 240 ATQTRSMFTV YYKPRTSQFI ISLNKYLEAM NNKFSVGMRF KMRFEGDDSP EKRFSGTVVG 300 VQDCSPHWKD SKWRSLQVNW DEPASFTRPV KVSPWEMEPF VTSENVPQSV NKRPRHVNEV 360 SALLDVGVTT SNLWSYALTQ SCITSQRNPP QYSDWPVSPY STLNGQMVFQ VDQKKHETPG 420 CRLFGIDLMS PSLPASEEKT ALMRPINVNK PDLDSNTDPK SEISKLSEEK KQEPAQASPK 480 EVQSKQISSS RSRTKVQMQG VPVGRAVDLT LLNGYVELID DLEKLFDIEG ELKSRNQWEI 540 VFTDDEGDMM LLGDDPWPEF CNMVKRIFIW SKEEVKKMTP GNQLQILLTE VDTTVSKTEN 600 YSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-165 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
4ldw_A | 1e-165 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
4ldw_B | 1e-165 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979473 | 0.0 | JN979473.1 Brassica rapa subsp. pekinensis auxin response factor 9-1 (ARF9-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469940.1 | 0.0 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A398ALQ5 | 0.0 | A0A398ALQ5_BRACM; Auxin response factor | ||||
STRING | Bo1g037360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |