PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3591_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 24352.3 Da PI: 6.5088 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9e-15 | 29 | 72 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+WT+eEd+ l+++v G g+W+t+a+ g++R++k+c+++w+ RrC3591_p2 29 KGPWTPEEDK-LLEYVSSNGEGRWSTVAKSAGLNRSGKSCRLKWR 72 79*****997.569******************************8 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 72 | 114 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+ RrC3591_p2 72 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWR 114 7888******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-16 | 22 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.363 | 24 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-25 | 26 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-9 | 28 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 29 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-9 | 31 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 76 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-9 | 76 | 116 | No hit | No description |
Pfam | PF13921 | 8.4E-7 | 76 | 119 | No hit | No description |
SMART | SM00717 | 5.0E-6 | 78 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.316 | 80 | 121 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLDWGVDQVH HPNHDHDPCK QQQQQGCRKG PWTPEEDKLL EYVSSNGEGR WSTVAKSAGL 60 NRSGKSCRLK WRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK NYWRAHYKKM 120 EISFSNQEKL VSQDNELNIA TSFSYPTSVY NDQFHMPQNV AATSIDHSMI DEEYDDPHVL 180 VVVQNREQLL ILLGSLTAAE MRLRRVDHGI I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 29 | 119 | 7 | 106 | B-MYB |
1h88_C | 6e-19 | 3 | 119 | 28 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-19 | 3 | 119 | 28 | 157 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371980 | 6e-56 | AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds. | |||
GenBank | AY519593 | 6e-56 | AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013696010.1 | 1e-100 | myb-related protein 305 | ||||
TrEMBL | A0A3P6E154 | 2e-98 | A0A3P6E154_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g009020.1 | 4e-99 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 3e-82 | myb domain protein 121 |