PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3531_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 238aa    MW: 26241.3 Da    PI: 10.3351
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3531_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.6e-19146180135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  RrC3531_p3 146 CSHCGVQKTPQWRAGPKGAKTLCNACGVRYKSGRL 180
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.7E-841234IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.66E-14137202No hitNo description
PROSITE profilePS5011412.189140176IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-16140194IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-15144178IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.03E-13145193No hitNo description
PfamPF003203.9E-17146180IPR000679Zinc finger, GATA-type
PROSITE patternPS003440146171IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDELADLEWL SHFVDDSFTE YSAPNLTGTP VEKPAWLTGN RKHPVTPASE ESCFKSPLPA  60
KARSRRNRNG VKPWSLGSSG PSSSGSTSSS SSSSGLSSPW FSGAELLEHD FTSEKPPAPK  120
KHKKRSAESV FSGKFQQQQQ QPQRRCSHCG VQKTPQWRAG PKGAKTLCNA CGVRYKSGRL  180
LPEYRPACSP TFSSELHSNH HRKVIEMRRK KEPTDDSSTG LNQPVKTPQA VPTKSFFT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894150.0AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444819.11e-138PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH571e-124GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3P6FRS51e-134A0A3P6FRS5_BRAOL; Uncharacterized protein
STRINGBo1g039780.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-120GATA transcription factor 5