PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3527_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 301aa    MW: 33775.8 Da    PI: 5.0198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3527_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.4e-21154204255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  RrC3527_p2 154 HYRGVRQRP-WGKYAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 204
                 7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-23154214IPR016177DNA-binding domain
SMARTSM003801.6E-37154218IPR001471AP2/ERF domain
PROSITE profilePS5103224.329154212IPR001471AP2/ERF domain
CDDcd000181.18E-32154212No hitNo description
PfamPF008476.2E-15154204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-33154213IPR001471AP2/ERF domain
PRINTSPR003679.9E-11155166IPR001471AP2/ERF domain
PRINTSPR003679.9E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MASHSEVSAL WFIEKHLLDE LSPVATDRWM IQESASTESS SDSSPMIFGS SSSSLAPVDF  60
SESPFKPEII DLSTPRFMDL ISVSDFDFKP SYQTGNQFEP DLKTQIPSAS DDDSQSNRKP  120
PLKISVPTKT GWIKFNPQPE VAKPSQAIAE EREHYRGVRQ RPWGKYAAEI RDPNKRGSRI  180
WLGTFDTAIE AARAYDEAAF RLRGSKAILN FPLEVGKWKK PRSDADGEKK RKREDIDDED  240
VKVAEKVLKT EQNVNSGESV PFVTSNLTEL CDWDLTGFLN FPLLSPLSPH PSFGYSKLTV  300
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29153215163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-29153215466ATERF1
3gcc_A2e-29153215466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218231KKPRSDADGEKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609112.11e-164PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_013712994.11e-164ethylene-responsive transcription factor 5
SwissprotO803411e-138EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A078GLD81e-162A0A078GLD8_BRANA; BnaC09g20100D protein
TrEMBLA0A0D3E7741e-162A0A0D3E774_BRAOL; Uncharacterized protein
STRINGBo9g069410.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-103ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]