PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3509_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 442aa MW: 49428.7 Da PI: 7.0084

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3509_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.1e-11	165	197	6	38
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 +rr+++NReAAr+sR+RKka++++Le+ +L RrC3509_p2 165 TQRRLAQNREAARKSRLRKKAYVQQLETSRLKL 197 58*************************855444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-5	160	231	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.2E-8	164	205	No hit	No description
SuperFamily	SSF57959	1.25E-6	166	206	No hit	No description
Pfam	PF00170	8.9E-8	166	193	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-29	250	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MNTTSTHVVP PRRFEIYETT TLSQVSMWEE SFKNNGGIYT PNSIVIPTNG KPDSLSEDTS 60 NGTPHKFDQE ASTSRHPDKS SSPTVTPITT VPPAEPIPHT TPSPTDTSSA APPSSDVPTL 120 SPPELPNPVP TPTTPTTPTT PNIMTTPTTP TTPPNPTNIP TESGTQRRLA QNREAARKSR 180 LRKKAYVQQL ETSRLKLIHL EQELNRARQQ GFYEGNRLDT NALGFSDKMS SGIVAFEMEY 240 GHWVEEQNRQ ISELRTVLHG QVSDVELRLL VDNAMKHYFQ LFRMKSAAAK IDVFYIMSGM 300 WKTSAERFFL WIGGFRPSEL LKVLLPHFDP LMDQQVLDVC NLRQSCQQAE DAVSQGMEKL 360 QHTLADSVAA GNLGEGSYIP QITCAMERLE ALADHLRHET LQQMHRILTT RQAARGLLAL 420 GEYFQRLRAL SSSWATRQRE PT

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MNTTSTHVVP PRRFEIYETT TLSQVSMWEE SFKNNGGIYT PNSIVIPTNG KPDSLSEDTS  60
NGTPHKFDQE ASTSRHPDKS SSPTVTPITT VPPAEPIPHT TPSPTDTSSA APPSSDVPTL  120
SPPELPNPVP TPTTPTTPTT PNIMTTPTTP TTPPNPTNIP TESGTQRRLA QNREAARKSR  180
LRKKAYVQQL ETSRLKLIHL EQELNRARQQ GFYEGNRLDT NALGFSDKMS SGIVAFEMEY  240
GHWVEEQNRQ ISELRTVLHG QVSDVELRLL VDNAMKHYFQ LFRMKSAAAK IDVFYIMSGM  300
WKTSAERFFL WIGGFRPSEL LKVLLPHFDP LMDQQVLDVC NLRQSCQQAE DAVSQGMEKL  360
QHTLADSVAA GNLGEGSYIP QITCAMERLE ALADHLRHET LQQMHRILTT RQAARGLLAL  420
GEYFQRLRAL SSSWATRQRE PT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353085	0.0	AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471318.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Refseq	XP_018471321.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Refseq	XP_018471322.1	0.0	PREDICTED: transcription factor TGA4 isoform X1
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A078HS17	0.0	A0A078HS17_BRANA; BnaC02g00560D protein
STRING	Bra028604.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]