PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC349_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 147aa    MW: 16246 Da    PI: 6.1088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC349_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-161362255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l+ 
  RrC349_p4 13 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVAFFCLHR 62
               8*****998.**********943...5*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.18E-241273No hitNo description
SuperFamilySSF541712.62E-161365IPR016177DNA-binding domain
PROSITE profilePS5103220.4681374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-241365IPR001471AP2/ERF domain
SMARTSM003801.4E-271380IPR001471AP2/ERF domain
PfamPF008474.3E-81360IPR001471AP2/ERF domain
PRINTSPR003675.0E-91425IPR001471AP2/ERF domain
PRINTSPR003675.0E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDSRDAGETH QAKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSTAEGAA VAHDVAFFCL  60
HRPSSLDEEV FNFSHLLQPS LASCTSPKSI QKAASDAGMA IDAGFAANKD GVYGGGEYRS  120
STANMAEYSE RETLSISVYD YLDDDRI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469550.11e-104PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I81e-75ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0D3APV33e-97A0A0D3APV3_BRAOL; Uncharacterized protein
STRINGBo2g072950.15e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.15e-78ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]