PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC347_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 463aa    MW: 51890.9 Da    PI: 6.5112
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC347_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.1e-10195251155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +       rk  + g ++ ++ Aa+a++ a++k++g
  RrC347_p8 195 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDRAARAYDLAALKYWG 251
                57*******************4444.2344336655.7799999*************98 PP
2AP249.31.2e-15296345355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  RrC347_p8 296 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 345
                9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-13195260IPR016177DNA-binding domain
CDDcd000186.03E-18195261No hitNo description
PfamPF008473.1E-8195251IPR001471AP2/ERF domain
PROSITE profilePS5103216.884196259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-11196259IPR001471AP2/ERF domain
SMARTSM003807.8E-19196265IPR001471AP2/ERF domain
PRINTSPR003673.5E-6197208IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18294354IPR016177DNA-binding domain
CDDcd000184.07E-11294353No hitNo description
Gene3DG3DSA:3.30.730.103.6E-18295353IPR001471AP2/ERF domain
PROSITE profilePS5103219.269295353IPR001471AP2/ERF domain
SMARTSM003803.3E-30295359IPR001471AP2/ERF domain
PfamPF008476.0E-10296345IPR001471AP2/ERF domain
PRINTSPR003673.5E-6335355IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MANWLTFAVS PMEMMKSPEH HPHFVSYDVD ESSTPYLIDN LYVLKEEAQT SMADSTTLAS  60
LFNPQTHSPT HIPKLEDFLG DSSLTQQQDS SSSLAQIYDP RLHAGATAGF ASDDNHHQPN  120
FEEMVVEAGA ASEEGCTKEG ALSLAVINTD LCDNGGEIVE NSKKKAVVET STDDGDSKKK  180
KKKKKVVETF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQG GYDKEDRAAR  240
AYDLAALKYW GPAATTNFQI ASYSKELEEM NHMTKQEFIA SIRRKSSGFS RGASMYRGVT  300
RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGINAVT NFEMNRYDVE  360
AIMKSCFPVG GTAVKRHKQQ LSLESPPTPP CDDHNIQQRL LLPSPSSTSP ELDPNSIPCG  420
VPFESSVLYH HHQSFLQYYP AVPDPTMVQV PMMNQADQFL MWY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162184KKKAVVETSTDDGDSKKKKKKKK
2178184KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534040.0AK353404.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486433.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
RefseqXP_018488460.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLM4E6J00.0M4E6J0_BRARP; Uncharacterized protein
STRINGBra024394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-162AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]