PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3475_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 75aa MW: 8595.99 Da PI: 7.1802 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 81.1 | 1.5e-25 | 6 | 53 | 45 | 92 |
NF-YB 45 fvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +ts asdkcqrekrktingddllwa++tlGfe+yveplk yl++yre RrC3475_p4 6 ILTSRASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKFYLTRYRE 53 689********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.36E-17 | 4 | 54 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.0E-22 | 5 | 54 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-6 | 7 | 32 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.9E-11 | 15 | 33 | No hit | No description |
PRINTS | PR00615 | 5.9E-11 | 34 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MGVVYILTSR ASDKCQREKR KTINGDDLLW AMTTLGFEEY VEPLKFYLTR YRESPVISVA 60 SLSEAGVCCM NLLFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-19 | 4 | 53 | 43 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-19 | 4 | 53 | 43 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189269 | 5e-54 | AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018493235.1 | 5e-27 | PREDICTED: nuclear transcription factor Y subunit B-10 | ||||
Swissprot | O23310 | 1e-24 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
Swissprot | P25209 | 2e-24 | NFYB_MAIZE; Nuclear transcription factor Y subunit B | ||||
TrEMBL | A0A397Y030 | 2e-25 | A0A397Y030_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5Y537 | 3e-25 | A0A3P5Y537_BRACM; Uncharacterized protein (Fragment) | ||||
TrEMBL | M4CRZ9 | 2e-25 | M4CRZ9_BRARP; Uncharacterized protein | ||||
STRING | Bra006991.1-P | 4e-26 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-27 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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