PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3475_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28457.6 Da PI: 4.5856 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.6e-18 | 12 | 99 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ ++ +++ + +p +f e+ + + ++ +l+ + g +W+v + +k ++ ++t+GW++F+++++Lk+g+f++F +dg+++fe v RrC3475_p2 12 FFKVFFSETASE--SMGIPMSFNEHLEDP--LPQRAKLQGTGGGVWTVSF--TKIRDCAYFTSGWSKFAEDHELKDGEFLTFVYDGHHTFEVSV 99 788885544444..48******9665655..7889***************..99988899*************************999995544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.12E-22 | 9 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-21 | 9 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-17 | 10 | 100 | No hit | No description |
PROSITE profile | PS50863 | 12.774 | 10 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-15 | 12 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-19 | 12 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-6 | 158 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-8 | 158 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.53 | 162 | 250 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDESEDDVLP RFFKVFFSET ASESMGIPMS FNEHLEDPLP QRAKLQGTGG GVWTVSFTKI 60 RDCAYFTSGW SKFAEDHELK DGEFLTFVYD GHHTFEVSVY GHCGCKETRA VVETVEVSDD 120 DSDGSEEEDS SADDDSDVSS NVTVSDDDAG LLSMEVTGNP CFTTKLKQRI YELLIPANVV 180 NEHGLTFEDS IKYIDAEGVM KGERGKMPDG RVCFKGWNRV CRRNRVREQD TVHCEMIHVR 240 KKVHSIKVTV TRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-20 | 11 | 105 | 10 | 104 | At1g16640 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189269 | 1e-118 | AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489310.1 | 1e-151 | PREDICTED: B3 domain-containing protein REM20-like | ||||
Swissprot | Q8LAV5 | 1e-87 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | M4CRZ7 | 1e-134 | M4CRZ7_BRARP; Uncharacterized protein | ||||
STRING | Bra006989.1-P | 1e-135 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 4e-43 | B3 family protein |
Publications ? help Back to Top | |||
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