PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3419_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 398aa    MW: 45960.2 Da    PI: 4.8655
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3419_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.3e-34581502103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++sws+ +nsf+v+d+++f+ ++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+ll++i+
    RrC3419_p2  58 FLTKTYDLVEDSRTNHVVSWSQANNSFIVWDPQSFSMTLLPIFFKHSNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGKKHLLKTIR 145
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    RrC3419_p2 146 RRKTS 150
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.16E-3453147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5654147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.3E-3754147IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-185881IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3058147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDPSHNFIKE DFPTGFIDSP LPPSSYLYST SIAPNDPTAT LSSPQPIEGL HESGPPPFLT  60
KTYDLVEDSR TNHVVSWSQA NNSFIVWDPQ SFSMTLLPIF FKHSNFSSFV RQLNTYGFRK  120
VNPDRWEFAN EGFLRGKKHL LKTIRRRKTS NNNQMQLPQS SSQQQSLDNC CTEVGRYGLD  180
GEMDSLRRDK QVLMMELVKV RQQQQSTKMH LTLLEDKLKK TESKQKQMMS FLARAMQNPD  240
FLQQLIEQKE KRKDTEEAID KKRQRPIDQG KRHLVCVEDY DDGGGGYGRY EKDAGSSSAF  300
FDMKQETYGD MSELDRLAMH IQGLGDQSNK EEVVLDVRKG NEEEQHKERY QEENNEIYGE  360
GFWEDLLNEG QKFDLEGDDE ENVDVLIEQL GYLGSSPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-225315012123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437641.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM4E4U60.0M4E4U6_BRARP; Uncharacterized protein
STRINGBra023800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B