PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC336_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 336aa    MW: 38049.2 Da    PI: 4.659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC336_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-18121170255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+++AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  RrC336_p6 121 KFRGVRRRP-WGKYAAEIRDPEQ---RRRIWLGTFSTAEEAALVYDNAAIRLRG 170
                89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.2E-29120178IPR001471AP2/ERF domain
SMARTSM003801.9E-39121184IPR001471AP2/ERF domain
PROSITE profilePS5103222.932121178IPR001471AP2/ERF domain
PfamPF008471.6E-11121170IPR001471AP2/ERF domain
CDDcd000182.97E-32121177No hitNo description
SuperFamilySSF541711.05E-20121178IPR016177DNA-binding domain
PRINTSPR003671.7E-9122133IPR001471AP2/ERF domain
PRINTSPR003671.7E-9144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMMDEYIDYR PVKYTEHKTV IKKYTKKLPV ENKKKKISAG RDSARLVRVC VTDHDATDSS  60
SDEEEFLFPR RRVKRLINEI RVEPSSSNEV SAASNKKGKS LAVDSSLQKV SAPCADQNQR  120
KFRGVRRRPW GKYAAEIRDP EQRRRIWLGT FSTAEEAALV YDNAAIRLRG PDALTNFTVP  180
PEPKPDQPEP ESQSSISVSS TTSESMDYSN HHLSSPTSVL NYQISEPMDE PAKPVKQEFL  240
EPINWHLGEG NGNDIDDSFP LDIPFLDNYF NQSLPDISIF DSSMSDIQSS GDNFFDDLAL  300
FDHNSMGGEN YSLDMEEVGS MFNSVDDFFT SDFLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21120177159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21120177462ATERF1
3gcc_A6e-21120177462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895660.0AC189566.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468776.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE31e-155CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A398AQ310.0A0A398AQ31_BRACM; Uncharacterized protein
STRINGBra026295.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-136cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]