PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3365_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37103.2 Da PI: 7.6332 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.2 | 1.1e-55 | 20 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP deel+++yLk+kv ++ +++ +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++ +++l RrC3365_p1 20 LPPGFRFHPADEELISYYLKPKVLNSLFSA-VAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFK-EKSL 116 79*************************999.67***************98999*****************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkg+kt+Wvmheyrle RrC3365_p1 117 VGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 146 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-61 | 17 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.82 | 20 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-29 | 21 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0051091 | Biological Process | positive regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDREVSRTRE IVEDSELIDL PPGFRFHPAD EELISYYLKP KVLNSLFSAV AIGEVDLNKV 60 EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FKEKSLVGMK 120 KTLVFYKGRA PKGVKTNWVM HEYRLEGEYA IDNLPKTAKN EWVISRVFQK QGDGKKMHIS 180 SLRMLGSGIN QFKPVGLPPL MDSSTYLKSR GDTFAGSLSH VTCFSDQTTE DKSHFSESKD 240 ECNFTMIGSS STHLIPNIGS MFHHNPVFMQ DNSSILKMLL DSEETQFKKN LQDLGTSDNE 300 LIASSWNGHD ISGSTAPVEV ACFWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 18 | 176 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-53 | 18 | 176 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-53 | 18 | 176 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738272 | 0.0 | KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454635.1 | 0.0 | PREDICTED: NAC domain-containing protein 59-like | ||||
Swissprot | Q9LJW3 | 1e-168 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | A0A3P5XUK5 | 0.0 | A0A3P5XUK5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F567 | 0.0 | M4F567_BRARP; Uncharacterized protein | ||||
STRING | Bra036223.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 1e-170 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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