PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3365_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 326aa    MW: 37103.2 Da    PI: 7.6332
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3365_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21.1e-55201461129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhP deel+++yLk+kv ++ +++  +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++ +++l
  RrC3365_p1  20 LPPGFRFHPADEELISYYLKPKVLNSLFSA-VAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFK-EKSL 116
                 79*************************999.67***************98999*****************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfykgrapkg+kt+Wvmheyrle
  RrC3365_p1 117 VGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 146
                 ****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6117170IPR003441NAC domain
PROSITE profilePS5100557.8220170IPR003441NAC domain
PfamPF023651.5E-2921145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDREVSRTRE IVEDSELIDL PPGFRFHPAD EELISYYLKP KVLNSLFSAV AIGEVDLNKV  60
EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FKEKSLVGMK  120
KTLVFYKGRA PKGVKTNWVM HEYRLEGEYA IDNLPKTAKN EWVISRVFQK QGDGKKMHIS  180
SLRMLGSGIN QFKPVGLPPL MDSSTYLKSR GDTFAGSLSH VTCFSDQTTE DKSHFSESKD  240
ECNFTMIGSS STHLIPNIGS MFHHNPVFMQ DNSSILKMLL DSEETQFKKN LQDLGTSDNE  300
LIASSWNGHD ISGSTAPVEV ACFWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-531817615171NO APICAL MERISTEM PROTEIN
1ut4_B9e-531817615171NO APICAL MERISTEM PROTEIN
1ut7_A9e-531817615171NO APICAL MERISTEM PROTEIN
1ut7_B9e-531817615171NO APICAL MERISTEM PROTEIN
3swm_A1e-521817618174NAC domain-containing protein 19
3swm_B1e-521817618174NAC domain-containing protein 19
3swm_C1e-521817618174NAC domain-containing protein 19
3swm_D1e-521817618174NAC domain-containing protein 19
3swp_A1e-521817618174NAC domain-containing protein 19
3swp_B1e-521817618174NAC domain-containing protein 19
3swp_C1e-521817618174NAC domain-containing protein 19
3swp_D1e-521817618174NAC domain-containing protein 19
4dul_A9e-531817615171NAC domain-containing protein 19
4dul_B9e-531817615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382720.0KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454635.10.0PREDICTED: NAC domain-containing protein 59-like
SwissprotQ9LJW31e-168NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A3P5XUK50.0A0A3P5XUK5_BRACM; Uncharacterized protein
TrEMBLM4F5670.0M4F567_BRARP; Uncharacterized protein
STRINGBra036223.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-170NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]