PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC335_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 193aa MW: 21616.9 Da PI: 7.6539 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.8 | 9.1e-28 | 101 | 159 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+s+gC+vkk+ver+ e+ +v++tYeg Hnhe RrC335_p2 101 MDDGYKWRKYGKKSVKNNTNKRNYYKCSSEGCMVKKRVERDGENAAYVITTYEGVHNHE 159 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-30 | 88 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 93 | 161 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.874 | 96 | 161 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-31 | 101 | 160 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-22 | 102 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MNPSQSPSPN FTFLSDEKSI YPFMDKYDFS SLMFDVGEGG NNGLIQEEPS SPTTIVTGES 60 GGSGSALTTL SKKESTGSKD GEKKEMGHRV AIRTRSQIDV MDDGYKWRKY GKKSVKNNTN 120 KRNYYKCSSE GCMVKKRVER DGENAAYVIT TYEGVHNHES PSHVYYSDMV LSFDHDNPSQ 180 HSLLRSIQKF PPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 91 | 162 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 91 | 162 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430060 | 1e-148 | KF430060.1 Brassica rapa WRKY transcription factor 51 (WRKY51) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437665.1 | 1e-135 | PREDICTED: probable WRKY transcription factor 51 | ||||
Swissprot | Q93WU9 | 1e-101 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A078H0L5 | 1e-121 | A0A078H0L5_BRANA; BnaA02g34400D protein | ||||
TrEMBL | M4ESX0 | 1e-121 | M4ESX0_BRARP; Uncharacterized protein | ||||
TrEMBL | V5RF86 | 1e-121 | V5RF86_BRACM; WRKY transcription factor 51 | ||||
STRING | Bra031900.1-P | 1e-122 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5711 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 7e-93 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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