PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC332_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 987aa    MW: 111444 Da    PI: 5.9021
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC332_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.77.4e-5651282118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg......vevlycyYahseenptf 94 
                l+e ++rwl++ ei++iL n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKv +      ++vl+cyYah+e n++f
  RrC332_p4   5 LSEaQHRWLRPAEICEILRNYHKFHIATESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVRTlfevgsIDVLHCYYAHGEGNENF 104
                45559***********************************************************************9999999***************** PP

       CG-1  95 qrrcywlLeeelekivlvhylevk 118
                qrrcyw+Le+el +iv+vhylevk
  RrC332_p4 105 QRRCYWMLEQELMHIVFVHYLEVK 128
                *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.2531133IPR005559CG-1 DNA-binding domain
SMARTSM010764.5E-804128IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-477127IPR005559CG-1 DNA-binding domain
SuperFamilySSF812966.12E-14396482IPR014756Immunoglobulin E-set
PROSITE profilePS5029718.669579661IPR020683Ankyrin repeat-containing domain
PfamPF127969.5E-7579656IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.04E-17580690IPR020683Ankyrin repeat-containing domain
CDDcd002044.67E-12585688No hitNo description
Gene3DG3DSA:1.25.40.201.7E-16587692IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0029629658IPR002110Ankyrin repeat
PROSITE profilePS5008811.22629661IPR002110Ankyrin repeat
SMARTSM000151.2805827IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.43E-8805855IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.004806835IPR000048IQ motif, EF-hand binding site
PfamPF006128.3E-4807826IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0029828850IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322829853IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4831850IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MEQLLSEAQH RWLRPAEICE ILRNYHKFHI ATESPTRPAS GSLFLFDRKV LRYFRKDGHN  60
WRKKKDGKTI KEAHEKLKVR TLFEVGSIDV LHCYYAHGEG NENFQRRCYW MLEQELMHIV  120
FVHYLEVKGS RTSIGMKENN SNSLSGTVSV NIDSAASPTS RLSSYCEDAD SVFGAGDSHQ  180
SSSVLQASPE PQTGNHNGWT SAPGMRSDSQ RLFDVQAWDA VGNLVTRYDQ PCNNLLVEER  240
TDKGGMLAAE HLRSPLQTQL NWQIPAQDDL PLPKWHLAPH SGMADDTDLA LFEQSAQDNF  300
ESFSSLLDIE HLQSDGIPPS NMETEFIPVK KSLLRHEDSL KKVDSFSRWA SKELGEMEDL  360
QMQSSRGDIA WTTVDCETAA AGLAFSPSLS EDQRFTIVDY WPKCAQTDAE VEVLVIGTFL  420
LSPQEVTICS WSCMFGEVEV PAEILVDGVL CCHAPPHTAG QVPFYVTCSN RFACSELREF  480
EFLSGSTKKI DAADIYGYSS KEASLQLRFE KLLARRDFVQ EHQIFEDVVE KRRKISSIML  540
LNEEKEYIFP GMYERDSTKQ EPKERVFREQ FEDELYIWLI HKVTEGGKGP NMLDEGGQGV  600
LHFVAALGYD WAIKPILAAG VNINFRDSNG WSALHWAAFS GREETVAVLV SLGADAGALT  660
DPSPELPLGK TAADLAYGKE HRGISGFLAE SSLTSYLEKL TMVSKENSPA NSSGPKAVQT  720
VSERTAAPMS YGDVPEKLSM KDSLTAVRNA TQAANRLHQV FRMQSFQRKQ LSGFDDDDDE  780
LGISDELAVS FAASKTKNPG HSEVFAHSAA THIQKKYRGW KKRKEYLLIR QRVVKIQAHV  840
RGHQVRKQYK PIVWSVGLLE KIILRWRRKG TGLRGFKRNA VPKTVEPEPL SPMMIPKEDD  900
YDFLDKGRKQ TEERLQKALT RVKSMVQYPE ARDQYRRLLT VVEGFRENEA SSSLSINNRE  960
ELVNCEEDDL IDIESLLNDD ILMSTSP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4913040.0AF491304.1 Brassica napus calmodulin-binding transcription activator (CAMTA) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446094.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X2
RefseqXP_018446095.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X2
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLM4CYT50.0M4CYT5_BRARP; Uncharacterized protein
STRINGBra009382.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein