PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3302_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 116aa    MW: 13474.8 Da    PI: 10.4449
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3302_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.7e-13229936
                HHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaeva 36
                r+ tf kR++g lKK +EL+vLC++e++
  RrC3302_p4  2 RKSTFNKRKKGFLKKVYELCVLCGIEAC 29
                788***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.026132IPR002100Transcription factor, MADS-box
SMARTSM004320.0036246IPR002100Transcription factor, MADS-box
PfamPF003192.7E-11230IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-11235IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MRKSTFNKRK KGFLKKVYEL CVLCGIEACA YVKLRPGGMT IELRSEKHSG EIRECARTGA  60
REKNTVNHQD FLKHSSIIKT MDDINKTMKE NNERNMMEAM FHILRGGNLK LIDKNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642507.14e-23agamous-like MADS-box protein AGL80
TrEMBLR0I6927e-22R0I692_9BRAS; Uncharacterized protein
STRINGBostr.2570s0083.1.p1e-23(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-24M-type_MADS family protein