PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3301_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23306.3 Da PI: 9.6842 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd +l +++ +G g+W I+r g++R +k+c++rw +yl RrC3301_p4 17 RGLWKPEEDMILRSYIETHGEGNWGDISRNSGLKRGGKSCRLRWKNYL 64 788*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l RrC3301_p4 70 RGGMSSQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 115 677899****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.907 | 12 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.91E-28 | 16 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-13 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-21 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-9 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 23.406 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.67E-10 | 73 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEKKRGEEER KSHVVKRGLW KPEEDMILRS YIETHGEGNW GDISRNSGLK RGGKSCRLRW 60 KNYLRPNIKR GGMSSQEQDL IIRMHKLLGN RWSLIAGRLP GRTDNEVKNY WNTHLNKKTN 120 GRKQNATESV EATTPWVDKP VMSAEARGIH GGGEGEEGTT TTTWMEETNF FARIESPLPL 180 ASHYPSDTLS FDPSFAFTDC FPLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 15 | 119 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468290.1 | 1e-149 | PREDICTED: transcription factor MYB82-like | ||||
Swissprot | Q9LTF7 | 1e-107 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A078JF76 | 1e-117 | A0A078JF76_BRANA; BnaC02g44890D protein | ||||
STRING | Bra022602.1-P | 1e-112 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 1e-101 | myb domain protein 82 |