PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC32_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 291aa    MW: 30887.9 Da    PI: 6.3142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC32_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.3e-091256345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W+ ++d  + +a + +  +    W++Ia+ ++ g++ +q+k+++ 
         RrC32_p6 12 AWSRDDDIAFERALASYTDEseeKWEKIAADVP-GKSVEQIKEHYE 56
                     8*****************99*************.**********95 PP
2Myb_DNA-binding422.1e-13118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
         RrC32_p6 118 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.487863IPR017884SANT domain
SMARTSM007174.2E-8961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-41257IPR009057Homeodomain-like
CDDcd001672.81E-81259No hitNo description
PfamPF002491.6E-71256IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-101366IPR009057Homeodomain-like
PROSITE profilePS5129417.581110167IPR017930Myb domain
SuperFamilySSF466891.22E-16113168IPR009057Homeodomain-like
SMARTSM007173.2E-10115165IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-17115165IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-10118161IPR009057Homeodomain-like
PfamPF002492.6E-11118162IPR001005SANT/Myb domain
CDDcd001678.06E-10118163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTVEEVSDGS SAWSRDDDIA FERALASYTD ESEEKWEKIA ADVPGKSVEQ IKEHYELLVE  60
DVSNIESGCV PLPSYGSPQG DVDDGGSTKK GGGGNSHAGE SNHGSKAKAD QERRKGIAWT  120
EDEHRLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KERRRTSIHD  180
ITSVGDADVS TPQGPITGQN NNNNNNNNNG SASAAAGVAG VAGGGGNKPA KQAASQPPPT  240
YGTPSIGQPV VGTPVNLPAP PHMAFAAPVP GAPVNMSQMP YTMPRTPTAH R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1613821180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471191.11e-173PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-158SRM1_ARATH; Transcription factor SRM1
TrEMBLE4MWT41e-162E4MWT4_EUTHA; mRNA, clone: RTFL01-15-N01
TrEMBLV4LAV41e-162V4LAV4_EUTSA; Uncharacterized protein
STRINGXP_006399351.11e-163(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-144MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]