PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC32_p14

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 282aa MW: 30062.7 Da PI: 8.527

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC32_p14	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.1	7.3e-39	69	235	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + s s+s + RrC32_p14 69 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStA-SLSTTSSS----Pftlgkrvraeeg 163 79**************************************************************9999977732.22222222....1222234555566 PP TCP 89 .......................................................kaaksaa..kskksqksaa 105 + +++ ++++q++++ RrC32_p14 164 gesgpgggeltvgptmgasvmsgggfwavparqdfgqvwsfaagatpemlftqqqQ--AATLfvRQQQQQQQQQ 235 66777888888888888888888888888888888888888777777777665321..1111112222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-34	75	235	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.287	75	129	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042752	Biological Process	regulation of circadian rhythm
GO:0043433	Biological Process	negative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MCPPSCLHQS FLLLSKNHFT SLNLLLLLER DREIERNLSH ADNSMENNDG AMTNGVIVEH 60 TSAKGPLNAV KKPPTKDRHS KVDGRGRRIR MPIICAARVF QLTRELGHKS DGQTIEWLLR 120 QAEPSIIAAT GTGTTPASFS TASLSTTSSS PFTLGKRVRA EEGGESGPGG GELTVGPTMG 180 ASVMSGGGFW AVPARQDFGQ VWSFAAGATP EMLFTQQQQA ATLFVRQQQQ QQQQQASAAV 240 AAMGEASAAR VGNYLPGHHL NLLASLSGGS PGSGRREEDD SR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00499	DAP	Transfer from AT5G08330	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472268.1	1e-129	PREDICTED: transcription factor TCP21
Swissprot	Q9FTA2	1e-109	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0D3B0A0	1e-115	A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QFI3	1e-115	A0A3N6QFI3_BRACR; Uncharacterized protein
TrEMBL	A0A3P6AN88	1e-115	A0A3P6AN88_BRAOL; Uncharacterized protein
STRING	Bo3g004850.1	1e-116	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	4e-64	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]