PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC329_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 318aa    MW: 36710.9 Da    PI: 7.671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC329_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-072051132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT eEd +l ++++  G g+W++ a+  g
        RrC329_p3 20 KGPWTLEEDTILTNYIAHNGEGRWNLLAKSSG 51
                     79**************************9877 PP

2Myb_DNA-binding49.11.3e-15108151146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ q+G++ W++Ia++++ gRt++++k++w++
        RrC329_p3 108 RGNLTPQEQLLILELHCQWGNR-WSKIAQYLP-GRTDNEIKNYWRT 151
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-61549IPR009057Homeodomain-like
PROSITE profilePS500908.4915102IPR017877Myb-like domain
SMARTSM007178.3E-619104IPR001005SANT/Myb domain
PfamPF002491.8E-52050IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-192152IPR009057Homeodomain-like
CDDcd001677.28E-422102No hitNo description
SuperFamilySSF466893.43E-2188163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1989109IPR009057Homeodomain-like
PROSITE profilePS5129423.772103157IPR017930Myb domain
SMARTSM007174.9E-13107155IPR001005SANT/Myb domain
PfamPF002493.1E-14108151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-22110156IPR009057Homeodomain-like
CDDcd001679.74E-10112151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTNIVKKRCI ENEEGVEQRK GPWTLEEDTI LTNYIAHNGE GRWNLLAKSS GNILVLLYFL  60
VFPEKCKIAL VCIEKLLSFL PKKKTGLKRK GKSCRLRWLN YLKPDIKRGN LTPQEQLLIL  120
ELHCQWGNRW SKIAQYLPGR TDNEIKNYWR TRVQKQARQL NIDSSSHQFV EAVRSFWVPR  180
LIHKMKDNSN TNTNTRTPPV DLLGPVSHDS GFDNMGCSTS MSQELTKMSQ FMDLSDLETT  240
NSMSLKGSRG SINYQCVSEN YCSLPCPEEY MVPTMGNSGI LPLKDCHVAD SSYEEDVTQD  300
PVWNMDDIWQ FEEYAHFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-19201577108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692LKRKGKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756631e-127KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490564.10.0PREDICTED: myb-related protein 305
SwissprotQ9C9G75e-96MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0D3CD880.0A0A0D3CD88_BRAOL; Uncharacterized protein
STRINGBo5g043390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-146myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]