PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3265_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 268aa    MW: 30126.5 Da    PI: 6.7061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3265_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-1985136156
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 s y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  RrC3265_p2  85 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 136
                 569*******.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-2285144IPR016177DNA-binding domain
PfamPF008473.3E-1286135IPR001471AP2/ERF domain
PROSITE profilePS5103223.97386143IPR001471AP2/ERF domain
SMARTSM003801.0E-3686149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-3186144IPR001471AP2/ERF domain
CDDcd000183.38E-3087144No hitNo description
PRINTSPR003673.1E-118798IPR001471AP2/ERF domain
PRINTSPR003673.1E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MCGGAVISEY ITPSRSGRSS ASKSSWRREN VVDLTLEDFE GEFESENDEI YGFSTAKPAS  60
LLRRSSSPRE DVRGKKEKKK KKKSSEYRGI RRRPWGRWAA EIRDPIKGVR VWLGTFNTAE  120
DAARAYDLEA KRIRGAKAKL NFPNESPSRK RKASSSFSSS SSQQPPQVKV EEKRPVPCSS  180
LWEGDTIQVD TQWLEDAIKG GEKRQKGCDG DGDGDDVNAQ LSEELLAFEK ETECFFQMPF  240
MEGRNCGSSS TTSMTSVFEG DDVLDLWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2283143263ATERF1
3gcc_A6e-2283143263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17482KKEKKKKKK
27893KKKKKSSEYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590358.11e-122PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T59e-63ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A0D3CX441e-121A0A0D3CX44_BRAOL; Uncharacterized protein
STRINGBo6g091540.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.28e-67ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]