PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3230_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LSD | ||||||||
Protein Properties | Length: 131aa MW: 13599.7 Da PI: 7.9248 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 28.9 | 1.9e-09 | 38 | 53 | 1 | 16 |
zf-LSD1 1 CggCrtlLsYPrGAps 16 C+gCr+lL+YP GA+s RrC3230_p1 38 CSGCRNLLMYPVGATS 53 **************98 PP | |||||||
2 | zf-LSD1 | 47 | 4.1e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV RrC3230_p1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48695 | 2.21E-5 | 6 | 107 | IPR011031 | Multihaem cytochrome |
Gene3D | G3DSA:3.90.10.10 | 6.7E-5 | 32 | 108 | No hit | No description |
TIGRFAMs | TIGR01053 | 9.3E-9 | 35 | 53 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-6 | 38 | 53 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.3E-15 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-5 | 101 | 119 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-4 | 104 | 119 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MPVPLAPYPT PPAQPLAPPY TPPPPANGST GGQSQLVCSG CRNLLMYPVG ATSLPNAGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGSCKML LMYQYGAKSG 120 STSTTDQKLN N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB193295 | 3e-90 | AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638467.1 | 6e-76 | PREDICTED: protein LOL1 | ||||
Swissprot | Q93ZB1 | 1e-59 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A0D3CGN5 | 1e-74 | A0A0D3CGN5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g087050.1 | 2e-75 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-60 | lsd one like 1 |
Publications ? help Back to Top | |||
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