PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3223_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 340aa    MW: 38410.8 Da    PI: 4.8954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3223_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde l ++++  G g+W++ +++ g+ R++k+c++rw +yl
       RrC3223_p3 14 RGRWTAEEDETLTNYIQINGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding57.43.4e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eEde +v+++ +lG++ W++Ia +++ gRt++++k++w+++l
       RrC3223_p3  67 RGNITAEEDETIVKLHSLLGNR-WSLIATHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.326961IPR017930Myb domain
SuperFamilySSF466891.36E-2811108IPR009057Homeodomain-like
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
PfamPF002493.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-211568IPR009057Homeodomain-like
CDDcd001673.31E-81661No hitNo description
PROSITE profilePS5129427.65862116IPR017930Myb domain
SMARTSM007174.2E-1766114IPR001005SANT/Myb domain
PfamPF002496.8E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2569116IPR009057Homeodomain-like
CDDcd001673.32E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRAPCCEKI GLKRGRWTAE EDETLTNYIQ INGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
LRMDLKRGNI TAEEDETIVK LHSLLGNRWS LIATHLPGRT DNEIKNYWNS HLSRKIYAFT  120
AARRDEHGLN VTDLVLNKSF SSSSCSSSRA KKKKGRTSRA SMKKHKQMLT ASQCTPQLKE  180
LESDISEEGH DGKFEGKSLE PYEWLDGEIE RLTGGFVWEY TNEEAVVEVN HDNSDQNKVC  240
ESGDNSSCCV GMFEEEHGKL GNLEVDHDVN VEKEREGGGM SSYSNENGDK DWWIGLCDSL  300
EIGFGIDDEL LGLEFGSVPC QSDDLWDLSD FGEIPQVDRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454842.10.0PREDICTED: transcription factor MYB12-like isoform X2
SwissprotQ9FJ071e-173MY111_ARATH; Transcription factor MYB111
TrEMBLA0A3P6DA780.0A0A3P6DA78_BRAOL; Uncharacterized protein
STRINGBra036145.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-165myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]