PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC32213_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 269aa MW: 30045.9 Da PI: 6.9341

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC32213_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67	3.8e-21	6	66	25	85
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ RrC32213_p1 6 GQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESRVKEEAESYWVMRNDV 66 4899***************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-10	9	63	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MALGSGQMEP KWASVSSYCR RHGVNRGPVQ CRKRWSNLAG DYKKIKEWES RVKEEAESYW 60 VMRNDVRRER KLPGFFDREV YDIVDGGVVP PANPVLSLGL APASMEEEEA ARSVEKLCSA 120 SAHKSLLDVI DKEKQAASGA EQGLCFVIFY ILAKIRFARA GFDFGIEGGM KERHPEEANP 180 EAGSTSQEER KRKRTSSGED KEGEGEATKS TQNQLIEILE RNGQLLAAQL EVQNTNLKLD 240 REQRKDHDAN LVAVLNKLAD AVAKIADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433876.1	1e-172	PREDICTED: trihelix transcription factor ASR3-like isoform X1
Swissprot	Q8VZ20	1e-123	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A078FRP4	1e-147	A0A078FRP4_BRANA; BnaA05g10030D protein
TrEMBL	A0A397Z8H6	1e-147	A0A397Z8H6_BRACM; Uncharacterized protein
TrEMBL	M4CMP8	1e-147	M4CMP8_BRARP; Uncharacterized protein
STRING	Bra005486.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-125	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]