PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3183_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 127aa    MW: 13818 Da    PI: 9.6414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3183_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.6e-211565255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+++AeIrd ++ g   r++lg+f+taeeAa+a+++a+ +++g
  RrC3183_p1 15 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 65
                8********.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-161565IPR001471AP2/ERF domain
PROSITE profilePS5103224.0261573IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-321575IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-241575IPR016177DNA-binding domain
CDDcd000184.19E-261574No hitNo description
SMARTSM003801.1E-351579IPR001471AP2/ERF domain
PRINTSPR003674.5E-121627IPR001471AP2/ERF domain
PRINTSPR003674.5E-123955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEQGGRGGGG GEQGKYRGVR RRPWGKYAAE IRDSRKHGER VWLGTFDTAE EAARAYDQAA  60
YSMRGQAAIL NFPHEYNMGS GGAATAAGSS SSSASSSRQY LDDSVLEELL EDRENPNKNN  120
TNKGKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-5111271131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659387.18e-65ethylene-responsive transcription factor ERF096
SwissprotQ9LSX03e-51ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A078IN682e-63A0A078IN68_BRANA; BnaC09g17590D protein
TrEMBLA0A3P6EFT92e-63A0A3P6EFT9_BRAOL; Uncharacterized protein
STRINGBo9g059180.18e-61(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-29ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]