PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3172_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRF

Protein Properties

Length: 329aa MW: 35816.1 Da PI: 8.728

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3172_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76	3.9e-24	101	143	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs++v++++k+CErHlhrgr rsrk++e RrC3172_p5 101 LEPGRCRRTDGKKWRCSKEVVSNHKYCERHLHRGRPRSRKHVE 143 69***************************************97 PP
2	QLQ	50.4	6.7e-18	54	85	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ RrC3172_p5 54 PFTNAQLKELERQAMIYKYMIASIPVPVDLLV 85 9*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-9	53	89	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.671	54	89	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.0E-11	54	84	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.629	100	144	IPR014977	WRC domain
Pfam	PF08879	1.5E-19	102	143	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDFLKVSDKT TSPYRSNSLF GLNQQHMETH PHPHPHVITP YAGNGVMGCY YYYPFTNAQL 60 KELERQAMIY KYMIASIPVP VDLLVSSSPP CNNKNAAGGD LEPGRCRRTD GKKWRCSKEV 120 VSNHKYCERH LHRGRPRSRK HVELPYSRPS SSNIGVLSSI KDKRVGPKEV SSARGIEIFP 180 ASNEQENKYL NFIDVWSDGV TSSDKQRTPA ASSSPSGNPC LYSLDLSMGG NNSMGHDEMG 240 LRVIGSGRDG YGPYGGGVVS SSLDEMSSWL ATTPGGPLAE ILRPNPSSVF SGEMEANSLT 300 ATPTPTPSSS PSRVVKKVTG SVSDESSQI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493791	5e-85	AB493791.1 Arabidopsis thaliana At5g53660 mRNA for hypothetical protein, partial cds, clone: RAAt5g53660.
GenBank	AK176109	5e-85	AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBank	BT010882	5e-85	BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468365.1	0.0	PREDICTED: growth-regulating factor 7
Swissprot	Q9FJB8	1e-155	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	A0A3P6DR96	0.0	A0A3P6DR96_BRAOL; Uncharacterized protein
STRING	Bra022667.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-136	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]