PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3152_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 863aa    MW: 94782.2 Da    PI: 4.6685
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3152_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK893.7e-28578628252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++
  RrC3152_p3 578 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 628
                 7889*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.450.407.2E-4186280IPR029016GAF domain-like
PROSITE profilePS5151916.756567648IPR003035RWP-RK domain
PfamPF020422.4E-24581628IPR003035RWP-RK domain
SuperFamilySSF542771.54E-22753850No hitNo description
PROSITE profilePS5174525.983763848IPR000270PB1 domain
SMARTSM006662.4E-27763848IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.4E-21764847No hitNo description
CDDcd064071.20E-38764847No hitNo description
PfamPF005642.6E-15764847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MEDDGGGSDG GEGNGAFSPN SSFGAFPEMP MDLDFMDELL FDGCWLETKQ SEDTASASNA  60
MDDNNNNTPF LYFAENPFQE KTSNDEETEN QEPPCNQAST SSLLEEAEVG RSLWIAPRGR  120
SQGPSSSVKE RLLRAISGLD EAVPDKDFLV QIWVPFQQEG KNFLTTLAQP HLFNQKYSSL  180
AQYRHVSETY NFPADEGSTE VGLPGRVFLQ KLPEWTPDVR FFRSEEYPRI KEAQKCDVRG  240
SLAVPVFERG SGTCLGVVEI ITTTQKMNYK PELENICKAL EAVDLRSSSN LMTPSTEFLQ  300
VYSDFYCAAL PEISDFLATV CRSYDLPLAL SWAPCDRQGK GGSRHSNENF SQCVSTIDSA  360
CFVLDEESKC FLEACSEYHL LQGEGMVGKA FEETKMFFVP EVTIFSKTNY ALAHHAKVSG  420
LHAALAVPLK GKSNGLVEFV LEFFFPKSCI DTEAKQEMLK SLSVTLQQDF KSSNLVIDKD  480
LELEVVLPDR EDMVLSETEE SLREVHMQDS SVIKANEKGK DPIDESKISS GLDNSQLDPI  540
PSGGCRVDAG PSTEPASTGG GNMLGSRRPG DKRRSKTEKI IGLEVLQQYF AGSLKDAAKS  600
IGVCPTTLKR ICRHHGITRW PSRKIKKVGH SLKKLQVVMD SVQGAQGSIP LDSFYTSFPA  660
LNSPNMSSNG PSLKSKEQLQ HLNAPTSEDK PAPRSPSSSC SGSSTNTANT LQVAENADAV  720
LKNAHGEVEL HNGNQEETKC LKEPPLLENV PVSSSKSLRA GGGIKVKVTF GEAIIRFTLP  780
PSWGYRELEG EIARRFNIDD VSWFDLKYLD DDNELVLLTC EGDLEECIDI HRSSSSQSQT  840
IKISLHDAFQ IKMGGSFGST GAS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492394.10.0PREDICTED: protein NLP1-like
SwissprotQ8H1110.0NLP1_ARATH; Protein NLP1
TrEMBLA0A078F3A40.0A0A078F3A4_BRANA; BnaC03g47510D protein
STRINGBra009659.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.10.0Nin-like family protein
Publications ? help Back to Top
  1. Suzuki W,Konishi M,Yanagisawa S
    The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor.
    Plant Signal Behav, 2014.
    [PMID:24270631]