PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3152_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 863aa MW: 94782.2 Da PI: 4.6685 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89 | 3.7e-28 | 578 | 628 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ RrC3152_p3 578 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 628 7889*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.450.40 | 7.2E-4 | 186 | 280 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 16.756 | 567 | 648 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.4E-24 | 581 | 628 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.54E-22 | 753 | 850 | No hit | No description |
PROSITE profile | PS51745 | 25.983 | 763 | 848 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.4E-27 | 763 | 848 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.4E-21 | 764 | 847 | No hit | No description |
CDD | cd06407 | 1.20E-38 | 764 | 847 | No hit | No description |
Pfam | PF00564 | 2.6E-15 | 764 | 847 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 863 aa Download sequence Send to blast |
MEDDGGGSDG GEGNGAFSPN SSFGAFPEMP MDLDFMDELL FDGCWLETKQ SEDTASASNA 60 MDDNNNNTPF LYFAENPFQE KTSNDEETEN QEPPCNQAST SSLLEEAEVG RSLWIAPRGR 120 SQGPSSSVKE RLLRAISGLD EAVPDKDFLV QIWVPFQQEG KNFLTTLAQP HLFNQKYSSL 180 AQYRHVSETY NFPADEGSTE VGLPGRVFLQ KLPEWTPDVR FFRSEEYPRI KEAQKCDVRG 240 SLAVPVFERG SGTCLGVVEI ITTTQKMNYK PELENICKAL EAVDLRSSSN LMTPSTEFLQ 300 VYSDFYCAAL PEISDFLATV CRSYDLPLAL SWAPCDRQGK GGSRHSNENF SQCVSTIDSA 360 CFVLDEESKC FLEACSEYHL LQGEGMVGKA FEETKMFFVP EVTIFSKTNY ALAHHAKVSG 420 LHAALAVPLK GKSNGLVEFV LEFFFPKSCI DTEAKQEMLK SLSVTLQQDF KSSNLVIDKD 480 LELEVVLPDR EDMVLSETEE SLREVHMQDS SVIKANEKGK DPIDESKISS GLDNSQLDPI 540 PSGGCRVDAG PSTEPASTGG GNMLGSRRPG DKRRSKTEKI IGLEVLQQYF AGSLKDAAKS 600 IGVCPTTLKR ICRHHGITRW PSRKIKKVGH SLKKLQVVMD SVQGAQGSIP LDSFYTSFPA 660 LNSPNMSSNG PSLKSKEQLQ HLNAPTSEDK PAPRSPSSSC SGSSTNTANT LQVAENADAV 720 LKNAHGEVEL HNGNQEETKC LKEPPLLENV PVSSSKSLRA GGGIKVKVTF GEAIIRFTLP 780 PSWGYRELEG EIARRFNIDD VSWFDLKYLD DDNELVLLTC EGDLEECIDI HRSSSSQSQT 840 IKISLHDAFQ IKMGGSFGST GAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492394.1 | 0.0 | PREDICTED: protein NLP1-like | ||||
Swissprot | Q8H111 | 0.0 | NLP1_ARATH; Protein NLP1 | ||||
TrEMBL | A0A078F3A4 | 0.0 | A0A078F3A4_BRANA; BnaC03g47510D protein | ||||
STRING | Bra009659.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17150.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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