PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC313_p13
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 448aa    MW: 51221.8 Da    PI: 7.2945
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC313_p13genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.23.8e-22125230186
    trihelix   1 rWtkqevlaLiearremeerlrr.gk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                 +Wt+ +v++Li a+ +++++ +  g                   +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +++ +++++++ 
  RrC313_p13 125 KWTDTMVRLLIMAVFYIGDEAGGlGGgdqttdaakkkisttgmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGRGtACRVVENQ 223
                 7**************77776663211233455566778888888**********************************************559999999 PP

    trihelix  80 pyfdqle 86 
                  +++ ++
  RrC313_p13 224 GLLETMD 230
                 9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819958.63E-62070No hitNo description
PfamPF138372.8E-20123257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MESNVMFSGF SPTMLTLEIP QNPPNPQNPV QFQHPHPHPY TTADQQSHQQ QQQQQMKPLY  60
PSPYATTKPT TTKQQLSPLS VGIGGGGEEE DDRGSGSGSG CHPEDSSAGT TTDGKRKISP  120
WHRMKWTDTM VRLLIMAVFY IGDEAGGLGG GDQTTDAAKK KISTTGMLQK KGKWKSVSRA  180
MVEKGFSVSP QQCEDKFNDL NKRYKRVNDI LGRGTACRVV ENQGLLETMD LRLTPKLKDE  240
VKKLLNSKHL FFKEMCAYHN SCGHLDQPNV PDQVVIPVPV IQSKPDQQGC FHAGKMTRER  300
EEEEESDMAE DSETEIEDTD EDEEEETRKK RRRVEGVSVK RMREETARVL DDPGKSAWEK  360
KEWMRRKALE LEERKVGYEW EAVEMEKQKV KWIRYRSKKE REMEKAKLEN QRRSLETERM  420
VLILRRREIE ITELQLAGKR VDPSSATG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329333KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485821.10.0PREDICTED: uncharacterized protein LOC108856505
TrEMBLA0A3P5ZLE00.0A0A3P5ZLE0_BRACM; Uncharacterized protein
STRINGBra029813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-147sequence-specific DNA binding transcription factors