PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC31353_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 85aa    MW: 9328.64 Da    PI: 10.9864
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC31353_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.3e-093376155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 s+y+GV+++k++g       d      + k+++lg+f+ta  Aa+a ++a+ k +g
  RrC31353_p1 33 SQYRGVTFYKRTGM------D------CgKQVYLGRFDTAHAAARAFDRAAIKCRG 76
                 78*********999......5......56**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-111984IPR001471AP2/ERF domain
PROSITE profilePS5103211.8122484IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-113384IPR016177DNA-binding domain
SMARTSM003802.3E-113485IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MDLSFDTKSV SPVPAAAPAE VRKSRRGPRS RSSQYRGVTF YKRTGMDCGK QVYLGRFDTA  60
HAAARAFDRA AIKCRGVDAA INFTI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447124.13e-22PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_012447125.13e-22PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_012447126.13e-22PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
RefseqXP_012447127.12e-22PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X4
RefseqXP_016750512.13e-22PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
RefseqXP_017604002.13e-22PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
SwissprotA0A0N7KMH02e-20AP24_ORYSJ; APETALA2-like protein 4
SwissprotB8B0I81e-20AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A166CX482e-26A0A166CX48_DAUCS; Uncharacterized protein
TrEMBLA0A4D8YX089e-27A0A4D8YX08_SALSN; AP2-like factor, euAP2 lineage
STRINGLus100199056e-27(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1938833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.13e-10related to AP2.7
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]