PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3110_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 243aa MW: 27099.8 Da PI: 8.1072 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.9e-06 | 215 | 237 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+ + +L +Hi + H RrC3110_p1 215 VCPKCSKGFREPGELLKHIDKdH 237 7******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 5.34E-12 | 4 | 57 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 3.7E-10 | 10 | 49 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.768 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.4E-13 | 13 | 49 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 1.4E-4 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.7E-10 | 91 | 147 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 3.79E-9 | 93 | 145 | No hit | No description |
PROSITE profile | PS51039 | 8.039 | 98 | 151 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 6.1E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0087 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 9.099 | 214 | 242 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 216 | 237 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CIQVFCLDHR SYMKHSCPKG NRGDVTVVIC 60 PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKTVKKKK CPVPRCRELL TFSNTIKCRD 120 CSIEHCLKHR FGPDHSCSGP KKLESSFSFM GFLSTTTNTK EAPASSSSRW SSLLASAEAS 180 IRELGNDISQ KLQFSSGDGS SEKTQERNGK VTVDVCPKCS KGFREPGELL KHIDKDHRGT 240 SIA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591875.1 | 1e-169 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
Refseq | XP_013706961.1 | 1e-169 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
Swissprot | Q9SCM4 | 1e-154 | SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
TrEMBL | A0A078J5Y9 | 1e-168 | A0A078J5Y9_BRANA; BnaCnng38560D protein | ||||
TrEMBL | A0A0D3CUC6 | 1e-168 | A0A0D3CUC6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H848 | 1e-168 | A0A3P6H848_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g072950.1 | 1e-169 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3908 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57480.1 | 1e-148 | C2H2 family protein |
Publications ? help Back to Top | |||
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