PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3108_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 764aa MW: 85799.6 Da PI: 6.0498

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3108_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.1	1.8e-28	512	562	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ RrC3108_p1 512 DKTITLDVLRQHFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 562 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.018	499	582	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-25	514	562	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-22	663	758	No hit	No description
PROSITE profile	PS51745	27.639	673	756	IPR000270	PB1 domain
SMART	SM00666	1.0E-26	673	756	IPR000270	PB1 domain
Pfam	PF00564	6.7E-19	674	755	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-20	674	753	No hit	No description
CDD	cd06407	7.50E-42	674	754	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MEDSNYLQTE NTVMDNEFMD GLLLDGCWLE TTDGSEFLDL TSSDPSSFMW PPAQDTSAIC 60 TSEVVSQTYG HHDCASLDEF QWNKRWWIGP GGGGSSVKER LVQAVEHIKD YITERGSLIQ 120 LWVPVHRGGK RVLTTKEQPY SHDPTCQRLA NYREISVNYH FSAEQDDSKA LAGLPGRVFL 180 GKLPEWTPDV RFFRSEEYPR VYHAQDCDVR GTLAIPVFEQ GSKVCLGVIE VVMTTEMVKL 240 APELESICRA LQGCDLSYKA ALPEIRNLLR CACETHKLPL AQTWVSCLHQ SKSGCRHNNE 300 NYIHCVSTID DACYLGDPTV REFHEACSEH HLLKGQGVAG QAFLTNGPCF SPDVSNYKKS 360 EYPLSHHANM FGLHGSVAIR LRCIHTGSVD FVLEFFLPKD CDDVEEQRKM LNALSTVMAH 420 VPRSLRIVTD KELEDESEVI VTPKIEITSE HAEDWLHQSS NPQNLGLIFD VGDKASDEFG 480 LKRDFGYTKD SNVNERRTFS SGGVERKRTK ADKTITLDVL RQHFAGSLKD AAKNIGVCPT 540 TLKRICRQHG IQRWPSRKIK KVGHSLQKIQ RVIDSVEGVS GPLPIGSFYS SFPHLASSRE 600 PSIQGKNSLL PHPLQLSKSP VSPYSHSSSS SQCCSSETQL TTTDVGGGVL TLSSLENISQ 660 STNLSSSSQD DDFLRIKVSY GEEKIRFRMG NSRRLTDLLW EIGKRFSIED MSRCDLKYLD 720 EDNEWVLLTC DEDVEECVDV CRTTPSHTIK LLLHVSSHCY SSWQ

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MEDSNYLQTE NTVMDNEFMD GLLLDGCWLE TTDGSEFLDL TSSDPSSFMW PPAQDTSAIC  60
TSEVVSQTYG HHDCASLDEF QWNKRWWIGP GGGGSSVKER LVQAVEHIKD YITERGSLIQ  120
LWVPVHRGGK RVLTTKEQPY SHDPTCQRLA NYREISVNYH FSAEQDDSKA LAGLPGRVFL  180
GKLPEWTPDV RFFRSEEYPR VYHAQDCDVR GTLAIPVFEQ GSKVCLGVIE VVMTTEMVKL  240
APELESICRA LQGCDLSYKA ALPEIRNLLR CACETHKLPL AQTWVSCLHQ SKSGCRHNNE  300
NYIHCVSTID DACYLGDPTV REFHEACSEH HLLKGQGVAG QAFLTNGPCF SPDVSNYKKS  360
EYPLSHHANM FGLHGSVAIR LRCIHTGSVD FVLEFFLPKD CDDVEEQRKM LNALSTVMAH  420
VPRSLRIVTD KELEDESEVI VTPKIEITSE HAEDWLHQSS NPQNLGLIFD VGDKASDEFG  480
LKRDFGYTKD SNVNERRTFS SGGVERKRTK ADKTITLDVL RQHFAGSLKD AAKNIGVCPT  540
TLKRICRQHG IQRWPSRKIK KVGHSLQKIQ RVIDSVEGVS GPLPIGSFYS SFPHLASSRE  600
PSIQGKNSLL PHPLQLSKSP VSPYSHSSSS SQCCSSETQL TTTDVGGGVL TLSSLENISQ  660
STNLSSSSQD DDFLRIKVSY GEEKIRFRMG NSRRLTDLLW EIGKRFSIED MSRCDLKYLD  720
EDNEWVLLTC DEDVEECVDV CRTTPSHTIK LLLHVSSHCY SSWQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189346	0.0	AC189346.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042N05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451304.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_018451305.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A397YP20	0.0	A0A397YP20_BRACM; Uncharacterized protein
STRING	Bo8g070310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein