PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC3086_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 29919.5 Da PI: 8.0643 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 6 | 52 | 1 | 47 |
TSSS-HHHHHHHHH.HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvd.avkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde+l + +v+++G+++W++I++ ++ gR++k+c++rw + RrC3086_p2 6 KGPWSQEEDEQLRRmVVEKHGPRNWSAISKSIP-GRSGKSCRLRWCNQ 52 79**********9835799**************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 61 | 103 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ eEde ++ a +++G++ W+tIar ++ gRt++ +k++w++ RrC3086_p2 61 PFSSEEDETILSARAKFGNK-WATIARLLN-GRTDNAVKNHWNST 103 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.195 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-29 | 3 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-14 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-17 | 6 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 7 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-15 | 8 | 51 | No hit | No description |
SMART | SM00717 | 1.9E-13 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.655 | 59 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 61 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-13 | 61 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.84E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MADRVKGPWS QEEDEQLRRM VVEKHGPRNW SAISKSIPGR SGKSCRLRWC NQLSPDVEHR 60 PFSSEEDETI LSARAKFGNK WATIARLLNG RTDNAVKNHW NSTLKRKFVA GGDCDVVVAK 120 RRSVSSESAP PVDTGLYMIS PESPTSTIPS PPSPMPVSVG FTVVPSEEDP ATSLSLSLSL 180 PGGDVGQGSR NTGSSSNNNA LLFERFESQM RIDSVEAARR DEFMRVVQEM IKAEVRSYMS 240 EIQKDSGGFV VGGGGGLYGT GNGGFRDSGL LPKVE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-36 | 5 | 108 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-36 | 5 | 108 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481062.1 | 1e-142 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | Q9SN12 | 1e-114 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A078GEJ4 | 1e-133 | A0A078GEJ4_BRANA; BnaC07g31640D protein | ||||
STRING | Bra012910.1-P | 1e-133 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13598 | 15 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50060.1 | 6e-92 | myb domain protein 77 |
Publications ? help Back to Top | |||
---|---|---|---|
|