PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3070_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 219aa MW: 24326.6 Da PI: 10.4432

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3070_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.4e-20	19	70	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GVr ++ +gr++AeIrdp++ r+r++lg+f+ta++Aa+a++aa+++++g+ RrC3070_p1 19 SRYRGVRKRP-WGRFAAEIRDPVK---RTRVWLGTFDTAQQAARAYDAAAREFRGA 70 79******.******755...5***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.2E-13	19	69	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.71E-22	19	78	IPR016177	DNA-binding domain
CDD	cd00018	2.73E-19	19	79	No hit	No description
SMART	SM00380	1.4E-35	20	83	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-31	20	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.184	20	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-11	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-11	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MKKGLKPDPN PVESNGKESR YRGVRKRPWG RFAAEIRDPV KRTRVWLGTF DTAQQAARAY 60 DAAAREFRGA KAKTNFPPTF LELNANKDGG FTRSPSQSST VDSASPTAAR LATLPHLELS 120 LGGGGGGAWY QVPVARPVYF YNSMKAFPPA ATCGGVGLKT MDQVSCTQAP VVGGPHLWLR 180 RMLEEYFFTA LRHLHGPYYL HSFDNLLTFT DEFAERRRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-19	17	80	11	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469523.1	1e-107	PREDICTED: ethylene-responsive transcription factor 4-like
Swissprot	O80340	2e-55	ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBL	A0A078J4Q0	3e-77	A0A078J4Q0_BRANA; BnaC06g41440D protein
TrEMBL	A0A0D3CQM6	3e-77	A0A0D3CQM6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G665	3e-77	A0A3P6G665_BRAOL; Uncharacterized protein
STRING	Bo6g031240.1	5e-78	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15210.1	8e-49	ethylene responsive element binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cao WH, et al. Modulation of ethylene responses affects plant salt-stress responses. Plant Physiol., 2007. 143(2): p. 707-19 [PMID:17189334] Lyons R, et al. The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation. Sci Rep, 2013. 3: p. 2866 [PMID:24104185] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gao S, et al. A cotton miRNA is involved in regulation of plant response to salt stress. Sci Rep, 2016. 6: p. 19736 [PMID:26813144] Zhou X, et al. The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling. Plant Physiol., 2016. 171(4): p. 2760-70 [PMID:27255484] Liu W, et al. The ethylene response factor AtERF4 negatively regulates the iron deficiency response in Arabidopsis thaliana. PLoS ONE, 2017. 12(10): p. e0186580 [PMID:29045490]