PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC30669_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 124aa    MW: 14122.7 Da    PI: 5.2159
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC30669_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-1211673596
                 EEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3 35 tltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96
                 t +l++  s+ +Wevk+      +++ lt+GW+eF+ a++L+ gD+++F+ +++ + f  +v++
  RrC30669_p1 11 TAKLRSdASNITWEVKV-----EDGHKLTDGWREFALAHDLRIGDILIFRQEKKdMAF--HVTL 67
                 66676658889******.....55678***********************65443555..7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.139171IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-14678IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-81163IPR003340B3 DNA binding domain
CDDcd100171.38E-131168No hitNo description
Gene3DG3DSA:2.40.330.107.3E-191784IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MYIQGKNEYH TAKLRSDASN ITWEVKVEDG HKLTDGWREF ALAHDLRIGD ILIFRQEKKD  60
MAFHVTLLGP SACEIQYESC SEEENNLGNI PNKKNSERQA ESSSLGPSCF SANIWPSSLR  120
YDTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484682.18e-79PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM46e-51REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A078G4M02e-69A0A078G4M0_BRANA; BnaC04g36220D protein
STRINGBo4g154840.14e-69(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.13e-53B3 family protein