PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3017_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 308aa    MW: 34097.9 Da    PI: 6.4409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3017_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-09150197455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  RrC3017_p5 150 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 197
                 8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-8144201No hitNo description
SuperFamilySSF474591.44E-15144215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15146214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6150197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
ENGGGFTALL ELPPTQAVEL LHSSSSSSSQ AASLHSLGAL AFPSNSLLME RAARFSVIAT  60
EQQNQNGNIS GETPTTTTSS VPSNERIKTE PAETETSDQA AVEKQNNRCG KRKDFDKKAK  120
GSSKKNKSSE ENEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCDKIQ  180
GTALVLDEII NHVQSLQRQV EMLSMRLASV NPRIDFNLDT ILSSENGSLM DGNFNGTAMQ  240
LAWPHQVMET EQAYHHRQLQ QPPPQQWPFD GLNQTIWGRE EDQDHGNDHN SLMVGSASLH  300
PNQVKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139008.10.0PREDICTED: transcription factor bHLH60-like isoform X1
SwissprotQ3EAI11e-157BH060_ARATH; Transcription factor bHLH60
TrEMBLM4DDN50.0M4DDN5_BRARP; Uncharacterized protein
STRINGBra014603.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]