PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2_p18
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 329aa    MW: 37192.5 Da    PI: 4.6257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2_p18genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18120170155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
               ++++GVr+++ +g+++AeIrdp     +  +r++lg+f taeeAa  +++a+ +l+g
  RrC2_p18 120 KKFRGVRRRP-WGKYAAEIRDP-----HqrRRIWLGTFSTAEEAAVVYDNAAIRLRG 170
               59********.**********7.....235*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.23E-32120177No hitNo description
PROSITE profilePS5103222.761121178IPR001471AP2/ERF domain
SMARTSM003804.5E-39121184IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-21121178IPR016177DNA-binding domain
PfamPF008471.9E-10121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-29121178IPR001471AP2/ERF domain
PRINTSPR003672.3E-9122133IPR001471AP2/ERF domain
PRINTSPR003672.3E-9144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMMDEYMDFR PVKYTEHKKV IKKYTKKLPV ENKKKISTVH DSARLVRVCV MDGDATDSSS  60
DDDDEFLFPR RRVKRLINEI RVEPSSSSGE VSALIKTEKS LAVDSPPQEV SVSGANQNQK  120
KFRGVRRRPW GKYAAEIRDP HQRRRIWLGT FSTAEEAAVV YDNAAIRLRG PDALTNFTVP  180
PEPEPVPDRE SNVSVFSASE STEDSHHHLS SPTSVLSYHI SEPVDEPVKP VKQEFLEPET  240
ISGHVDEVNV PFSLDIPFPD NYFTETLQDI SIFDQSMSPI QSSENDFLDD LLVFDNNNIG  300
GENYSSQIKE IGSIFNDLDD SLISELLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21120177159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-21120177462ATERF1
3gcc_A1e-21120177462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480801.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_018485033.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE31e-148CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A078GTN90.0A0A078GTN9_BRANA; BnaA03g48910D protein
TrEMBLA0A397KZ550.0A0A397KZ55_BRACM; Uncharacterized protein
TrEMBLM4FIB00.0M4FIB0_BRARP; Uncharacterized protein
STRINGBra040839.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-126cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]