PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC29_p9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 246aa MW: 28020.8 Da PI: 7.8572 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107 | 3e-33 | 61 | 180 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssg......kaa 91 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak ++el+ ++++++s+ ++++ns+++ ++ RrC29_p9 61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLQFPQESFDldkgkwV-----KQDENSNQDhgfntsQQH 156 78*************************************************************999996666443332.....333322222345453444 PP TCP 92 ksaakskksqksaasalnlakesr 115 s ++ +++++a+s nl + ++ RrC29_p9 157 FSLTNLYNNNNNASSYYNLGHVQH 180 444488888888888888887554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.424 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.9E-29 | 62 | 165 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MRSREFDEEE TQAKQERDHN HQLNLNNMLQ QQNQPSSAPT SRQWTSAFRN PRIVRVSRTF 60 GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL 120 PPLQFPQESF DLDKGKWVKQ DENSNQDHGF NTSQQHFSLT NLYNNNNNAS SYYNLGHVQH 180 SLDQPGNNVT VAISNVPYNN NLNLPPPPTM SSLFPTYPSF LGASHHVVDG AGNLQLFSSN 240 ANRNNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437652.1 | 1e-146 | PREDICTED: transcription factor TCP5-like | ||||
Swissprot | Q9FME3 | 1e-107 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | A0A291I313 | 1e-138 | A0A291I313_BRARR; TCP17 | ||||
STRING | Bra029344.1-P | 1e-139 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 8e-89 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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