PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2981_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 339aa    MW: 38388.7 Da    PI: 5.7844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2981_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31210269159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  RrC2981_p3 210 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 269
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-33195271IPR003657WRKY domain
SuperFamilySSF1182904.84E-28203271IPR003657WRKY domain
PROSITE profilePS5081129.023205271IPR003657WRKY domain
SMARTSM007741.9E-37210270IPR003657WRKY domain
PfamPF031061.2E-27211269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGMDLSLKLE KEKDEGRSKH SREKEVEEEE DDDDVGASED KDEQLVTEVE TEDSCLSSRT  60
RKEEKEREEL LQMQTEMEHV KEENTRLRKL VEQTLQDYRQ LEMKFPVIDQ TNKMDLETFL  120
GAQAKAQKRG VERIASLPLV DGELGLSLSL QKKQKQGENK EAESRNTQRC NSSSTIQGKD  180
INTQRVITSS SQGNRKARVS VRARCETATM NDGCQWRKYG QKTAKGNPCP RAYYRCTVAP  240
GCPVRKQVQR CLEDMSILIT TYEGTHNHPL PVGATAMAST ASTSPFLLLD SSDNLSHPSY  300
FQQNGSENRS IRSLINFDDP SSRGGDHVSS SQNRLNWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23197273176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300320.0KF430032.1 Brassica rapa WRKY transcription factor 9 (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288948.10.0probable WRKY transcription factor 9
SwissprotQ9C9F01e-154WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A3P6BRV80.0A0A3P6BRV8_BRACM; Uncharacterized protein (Fragment)
STRINGBra004285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-128WRKY DNA-binding protein 9